JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PARS2_chr1_54751898_54769523	0/0	a0004	475	2	0	0	2	0	0	copy fasta	PARS2	chr1	54751898	54769523
PARVA_chr11_12372571_12540356	1/1	a0001	372	281	90	50	99	10	30	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	a0002	372	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	a0003	372	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	a0004	372	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	a0005	372	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	a0006	372	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVB_chr22_44019302_44177939	0/1	a0001	364	286	74	54	110	14	33	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	1/0	a0002	364	24	2	8	2	2	9	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0003	364	9	8	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0004	364	3	1	0	2	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0005	364	3	3	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0006	364	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0007	364	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0008	364	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0009	364	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0010	364	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0011	364	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	a0012	364	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVG_chr22_44175925_44213469	1/1	a0001	331	413	89	74	186	18	44	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	a0002	331	3	3	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	a0003	317	2	2	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	a0004	331	1	0	0	0	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	a0005	331	1	0	0	0	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	a0006	331	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	a0007	331	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PASD1_chrX_151558675_151681739	1/1	a0001	773	184	66	31	63	5	17	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0002	773	21	2	11	3	1	4	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0003	766	4	0	3	0	0	1	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0004	773	3	3	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0005	773	2	2	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0006	773	2	0	0	2	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0007	773	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0008	773	1	0	1	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0009	773	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0010	773	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	a0011	259	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASK_chr2_241101099_241154472	1/0	a0001	1323	157	27	29	64	7	29	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/1	a0002	1323	63	5	13	32	4	8	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0003	1323	39	0	7	31	0	1	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0004	1323	34	6	2	26	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0005	1323	20	5	8	4	1	2	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0006	1323	12	11	1	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0007	1323	9	9	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0008	1323	8	8	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0009	1323	4	4	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0010	1323	4	4	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0011	1323	3	3	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0012	1323	3	3	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0013	1323	2	0	0	1	0	1	copy fasta	PASK	chr2	241101099	241154472