JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PASK_chr2_241101099_241154472	0/0	a0014	1323	2	0	2	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0015	1323	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0016	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0017	1323	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0018	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0019	1323	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0020	1323	1	0	0	0	0	1	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0021	1323	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0022	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0023	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0024	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0025	1323	1	0	1	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0026	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0027	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0028	1323	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0029	1323	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	a0030	1323	1	0	1	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PATE1_chr11_125741279_125754867	1/0	a0001	126	168	32	37	82	4	12	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/1	a0002	126	148	29	13	86	4	15	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	a0003	126	111	25	24	48	2	12	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	a0004	126	7	6	0	0	0	1	copy fasta	PATE1	chr11	125741279	125754867
PATE2_chr11_125771113_125783828	1/1	a0001	113	414	90	68	206	12	36	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	a0002	113	1	0	0	0	0	1	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	a0003	113	1	0	0	0	0	1	copy fasta	PATE2	chr11	125771113	125783828
PATE3_chr11_125783127_125796600	1/1	a0001	98	398	76	62	209	11	38	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	a0002	98	27	16	6	0	1	4	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	a0003	98	2	0	0	2	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	a0004	98	1	0	0	1	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE4_chr11_125828316_125845072	1/1	a0001	98	353	91	58	158	11	33	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	a0002	98	67	3	14	40	1	9	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	a0003	98	2	0	0	0	0	2	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	a0004	98	2	2	0	0	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATJ_chr1_61737480_62168915	0/0	a0001	1882	20	13	1	3	1	2	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0002	1882	10	6	3	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0003	1882	8	1	1	2	1	3	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0004	1882	8	0	2	2	1	3	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0005	1882	7	2	3	2	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0006	1882	7	2	2	1	0	2	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/1	a0007	1882	7	3	2	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0008	1882	7	1	4	0	0	2	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0009	1882	6	2	0	1	0	3	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0010	1882	4	2	2	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0011	1882	4	0	2	1	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0012	1882	4	0	2	0	1	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0013	1882	3	2	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0014	1882	3	0	2	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0015	1882	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0016	1882	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0017	1882	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0018	1882	2	0	1	0	1	0	copy fasta	PATJ	chr1	61737480	62168915