JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PATJ_chr1_61737480_62168915	0/0	a0019	1882	2	0	0	1	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0020	1882	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0021	1882	2	0	1	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0022	1882	2	0	1	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0023	1882	2	0	1	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0024	1882	2	0	0	1	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0025	1882	2	0	0	1	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0026	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0027	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0028	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0029	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0030	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0031	1882	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0032	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0033	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0034	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0035	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0036	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	1/0	a0037	1882	1	0	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0038	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0039	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0040	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0041	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0042	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0043	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0044	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0045	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0046	1882	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0047	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0048	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0049	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0050	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0051	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0052	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0053	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0054	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0055	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0056	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0057	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0058	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0059	1882	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0060	1882	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0061	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0062	1882	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	a0063	1882	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATL1_chr11_59631716_59674037	1/1	a0001	770	271	75	58	122	0	14	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	a0002	770	3	3	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	a0003	770	2	2	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL2_chr15_44660732_44716323	0/1	a0001	543	212	45	39	89	9	29	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	a0002	543	32	18	0	14	0	0	copy fasta	PATL2	chr15	44660732	44716323