JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PATL2_chr15_44660732_44716323	0/0	a0003	543	10	9	1	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	1/0	a0004	543	2	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	a0005	543	2	0	0	0	1	1	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	a0006	543	1	0	0	1	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	a0007	543	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	a0008	543	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	a0009	539	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATZ1_chr22_31320804_31351346	1/1	a0001	687	286	74	59	97	14	40	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	a0002	687	81	7	12	62	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	a0003	298	11	0	1	9	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	a0004	66	5	1	0	4	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	a0005	63	1	0	0	0	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	a0006	422	1	0	0	1	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	a0007	687	1	0	0	1	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PAWR_chr12_79579879_79695964	1/1	a0001	340	156	17	33	84	2	18	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	a0002	340	82	36	8	31	0	7	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	a0003	340	11	8	2	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	a0004	340	3	3	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	a0005	340	2	2	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	a0006	340	1	0	1	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	a0007	340	1	0	0	0	0	1	copy fasta	PAWR	chr12	79579879	79695964
PAX1_chr20_21700664_21723481	1/1	a0001	457	392	94	66	172	18	40	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	a0002	457	4	2	2	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	a0003	457	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	a0004	457	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	a0005	457	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	a0006	457	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX2_chr10_100740582_100834944	1/1	a0001	394	228	89	48	41	10	38	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	a0002	394	2	2	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	a0003	394	1	0	0	1	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	a0004	394	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX3_chr2_222194887_222303998	1/1	a0001	484	323	81	59	128	16	37	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	a0002	484	2	0	1	0	0	1	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	a0003	484	2	0	0	0	0	2	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	a0004	484	1	1	0	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX4_chr7_127605292_127623142	0/1	a0001	351	251	75	57	73	13	32	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	1/0	a0002	351	129	15	17	78	5	13	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0003	351	17	0	0	17	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0004	351	9	0	1	8	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0005	351	8	0	0	8	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0006	351	7	6	1	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0007	351	2	0	0	2	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0008	351	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0009	351	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0010	351	1	0	0	0	0	1	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0011	351	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	a0012	351	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX5_chr9_36828269_37039268	1/1	a0001	391	268	87	52	85	10	32	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	a0002	391	3	3	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	a0003	391	3	0	0	3	0	0	copy fasta	PAX5	chr9	36828269	37039268