JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PAX6_chr11_31784026_31816322	1/1	a0001	436	375	88	69	162	12	42	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	a0002	436	1	0	1	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX7_chr1_18625846_18753866	1/1	a0001	505	297	88	63	102	6	36	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	a0002	505	3	0	0	3	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	a0003	505	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	a0004	505	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX8_chr2_113210997_113283921	1/1	a0001	450	297	89	54	115	9	28	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	a0002	450	1	0	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	a0003	450	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	a0004	450	1	0	0	0	1	0	copy fasta	PAX8	chr2	113210997	113283921
PAX9_chr14_36656860_36684362	1/1	a0001	341	287	71	52	122	13	27	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	a0002	341	154	17	23	88	5	21	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	a0003	341	4	3	1	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	a0004	341	1	1	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAXBP1_chr21_32728899_32776755	1/1	a0001	917	353	89	54	154	12	42	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	a0002	917	4	3	0	1	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	a0003	917	1	1	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	a0004	917	1	0	0	1	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	a0005	917	1	1	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXIP1_chr7_154938690_155008124	1/1	a0001	1069	260	72	38	115	8	25	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	a0002	1069	91	6	19	51	2	13	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	a0003	1070	7	5	2	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	a0004	1069	1	1	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	a0005	1069	1	0	1	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	a0006	1069	1	0	0	1	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	a0007	1069	1	0	0	1	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXX_chr9_136987422_136998976	1/1	a0001	204	371	81	73	160	12	43	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	a0002	204	12	11	1	0	0	0	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	a0003	204	1	0	0	0	0	1	copy fasta	PAXX	chr9	136987422	136998976
PBDC1_chrX_76168062_76183314	1/1	a0001	233	291	73	46	128	11	31	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	a0002	28	1	0	0	1	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	a0003	233	1	0	0	1	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBK_chr8_27804624_27842817	1/1	a0001	322	253	59	53	97	9	33	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0002	322	112	16	10	79	1	6	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0003	322	12	11	1	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0004	322	8	7	1	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0005	322	3	0	0	0	0	3	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0006	74	1	0	1	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0007	322	1	1	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0008	322	1	0	0	1	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	a0009	322	1	0	0	1	0	0	copy fasta	PBK	chr8	27804624	27842817
PBLD_chr10_68277660_68337928	1/1	a0001	288	231	49	39	107	12	22	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	a0002	288	126	32	18	53	2	21	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	a0003	288	5	4	0	0	0	1	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	a0004	288	1	0	1	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	a0005	288	1	1	0	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBOV1_chr6_138210986_138223491	0/1	a0000	0	90	10	10	66	1	2	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	1/0	a0001	135	282	72	50	112	9	38	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	a0002	135	12	12	0	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBRM1_chr3_52540367_52690913	1/1	a0001	1704	296	80	62	115	16	21	copy fasta	PBRM1	chr3	52540367	52690913