JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PBRM1_chr3_52540367_52690913	0/0	a0002	1704	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	a0003	1704	1	0	0	0	0	1	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	a0004	1704	1	0	0	1	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	a0005	1704	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBX1_chr1_164554184_164856831	0/0	a0001	430	125	66	23	17	4	15	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	a0002	430	59	0	17	37	0	5	copy fasta	PBX1	chr1	164554184	164856831
PBX2_chr6_32179733_32195202	0/0	a0000	0	1	0	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/1	a0001	430	432	92	79	200	16	44	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	a0002	430	2	2	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX3_chr9_125742373_125972377	1/1	a0001	434	291	84	45	125	10	25	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	a0002	434	1	0	0	1	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	a0003	434	1	0	0	0	0	1	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	a0004	434	1	0	1	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX4_chr19_19556713_19623687	1/1	a0001	374	367	70	75	161	16	43	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	a0002	374	3	0	0	0	0	3	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	a0003	374	2	2	0	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	a0004	70	1	0	0	1	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	a0005	374	1	1	0	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	a0006	374	1	1	0	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	a0007	374	1	0	1	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBXIP1_chr1_154939080_154961099	0/0	a0001	731	146	13	31	78	5	19	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0002	731	125	71	24	12	11	7	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0003	731	5	0	0	5	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0004	731	3	3	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0005	731	1	1	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0006	727	1	0	0	1	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0007	731	1	0	0	0	0	1	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0008	731	1	1	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0009	203	1	0	1	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0010	731	1	0	0	0	0	1	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	a0011	731	1	1	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PCARE_chr2_29056695_29079523	1/1	a0001	1288	229	28	54	103	13	29	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0002	1289	68	0	4	60	0	4	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0003	1289	45	2	10	27	3	3	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0004	1289	30	13	2	15	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0005	1289	14	13	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0006	1289	13	9	2	2	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0007	1289	8	0	0	8	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0008	1288	5	5	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0009	1288	4	2	2	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0010	1289	4	0	0	4	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0011	1289	3	3	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0012	1288	3	3	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0013	1288	3	0	0	1	0	2	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0014	1288	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0015	1288	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0016	1288	2	0	0	1	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0017	1288	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0018	1289	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0019	1288	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523