JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCARE_chr2_29056695_29079523	0/0	a0020	1289	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0021	1288	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0022	1288	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0023	201	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0024	1288	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0025	1288	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0026	1289	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0027	1288	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0028	1288	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0029	1288	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0030	1289	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0031	1288	1	0	0	0	1	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0032	1288	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0033	1289	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0034	1288	1	0	0	0	1	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0035	1288	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0036	1288	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0037	1288	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0038	1289	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0039	1288	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0040	1288	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0041	1289	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0042	1289	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0043	1288	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	a0044	1289	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCBD1_chr10_70878510_70893565	1/1	a0001	104	446	97	77	202	18	50	copy fasta	PCBD1	chr10	70878510	70893565
PCBD1_chr10_70878510_70893565	0/0	a0002	104	1	0	1	0	0	0	copy fasta	PCBD1	chr10	70878510	70893565
PCBD1_chr10_70878510_70893565	0/0	a0003	104	1	1	0	0	0	0	copy fasta	PCBD1	chr10	70878510	70893565
PCBD2_chr5_134900131_134967644	1/1	a0001	130	330	82	62	136	14	34	copy fasta	PCBD2	chr5	134900131	134967644
PCBP1_chr2_70082477_70094203	1/1	a0001	356	403	92	74	175	18	42	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	a0002	356	1	0	0	1	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP2_chr12_53447102_53486162	1/1	a0001	362	348	84	60	144	12	46	copy fasta	PCBP2	chr12	53447102	53486162
PCBP3_chr21_45638725_45947450	1/1	a0001	371	289	84	60	93	10	40	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	a0002	371	1	0	0	1	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	a0003	371	1	0	0	1	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	a0004	371	1	0	0	1	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP4_chr3_51952458_51972454	1/1	a0001	403	292	63	56	118	9	44	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	a0002	403	19	19	0	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	a0003	403	1	0	0	0	1	0	copy fasta	PCBP4	chr3	51952458	51972454
PCCA_chr13_100084093_100535435	1/1	a0001	728	162	48	39	39	6	28	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	a0002	728	6	6	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	a0003	728	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	a0004	728	1	0	0	1	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	a0005	728	1	0	1	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	a0006	728	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	a0007	728	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	a0008	728	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCB_chr3_136245340_136335169	1/1	a0001	539	293	85	57	105	10	34	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	a0002	539	2	2	0	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	a0003	545	1	0	0	1	0	0	copy fasta	PCCB	chr3	136245340	136335169