JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCCB_chr3_136245340_136335169	0/0	a0004	539	1	1	0	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	a0005	539	1	0	0	0	0	1	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	a0006	539	1	0	1	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	a0007	539	1	0	0	0	0	1	copy fasta	PCCB	chr3	136245340	136335169
PCDH10_chr4_133144294_133199700	1/1	a0001	1040	374	86	79	165	10	32	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	a0002	1040	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	a0003	1040	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	a0004	1040	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	a0005	1040	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	a0006	1040	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	a0007	1040	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	a0008	1040	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH11X_chrX_91774375_92628230	0/0	a0001	1347	147	46	25	53	5	18	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	a0002	1347	4	0	0	4	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	a0003	1347	2	0	0	2	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	a0004	1347	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11Y_chrY_4995296_5747224	0/0	a0001	1248	94	16	13	54	3	8	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	a0002	1248	16	0	7	0	2	7	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	a0003	1248	3	0	0	3	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	a0004	1248	1	0	0	1	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	a0005	1248	1	1	0	0	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH12_chr5_141938581_141963202	0/1	a0001	1187	224	24	34	131	5	29	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0002	1184	67	45	6	6	3	7	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0003	1184	56	2	23	22	3	6	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	1/0	a0004	1184	20	0	7	3	4	5	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0005	1188	8	6	2	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0006	1184	4	4	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0007	1184	4	1	1	0	2	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0008	1187	3	1	0	2	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0009	1187	3	2	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0010	1186	3	3	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0011	1184	3	3	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0012	1184	3	3	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0013	1187	2	0	0	2	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0014	1184	2	2	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0015	1184	2	0	0	2	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0016	1184	1	0	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0017	1184	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0018	1184	1	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0019	1187	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0020	1187	1	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0021	1187	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0022	1184	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	a0023	1187	1	0	0	0	1	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH15_chr10_53797771_54806231	1/0	a0001	1740	21	10	7	1	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0002	1740	15	11	2	1	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0003	1740	12	6	3	1	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0004	1740	8	2	2	2	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0005	1740	5	2	1	0	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0006	1740	4	2	0	1	0	1	copy fasta	PCDH15	chr10	53797771	54806231