Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCC8_chr11_17387885_17481845	0/0	a0013	1581	1	0	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0014	1581	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	a0015	1581	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC9_chr12_21792389_21946426	1/1	a0001	1549	208	77	33	68	10	18	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	a0002	1549	2	2	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	a0003	1549	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	a0004	1549	1	0	1	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCD1_chrX_153719856_153749755	1/1	a0001	745	280	78	48	111	11	30	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	a0002	67	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	a0003	193	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	a0004	745	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	a0005	745	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	a0006	745	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD2_chr12_39545033_39624803	1/1	a0001	740	324	81	52	145	6	38	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	a0002	740	11	0	6	5	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	a0003	740	3	1	2	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	a0004	740	2	0	0	2	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD3_chr1_94413389_94523663	1/1	a0001	659	362	82	50	182	12	34	copy fasta	ABCD3	chr1	94413389	94523663
ABCD4_chr14_74280269_74307934	1/0	a0001	606	244	50	50	111	6	26	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/1	a0002	606	103	17	19	46	8	12	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0003	606	21	19	2	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0004	606	4	3	1	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0005	606	3	0	1	0	2	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0006	606	2	0	0	1	0	1	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0007	606	2	2	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0008	606	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0009	606	1	0	1	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0010	606	1	0	0	0	0	1	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0011	606	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	a0012	606	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCE1_chr4_145093311_145134524	1/1	a0001	599	259	88	56	77	10	26	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	a0002	599	1	0	0	1	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCF1_chr6_30566442_30596522	0/1	a0001	845	399	81	77	179	14	47	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0002	845	3	2	0	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0003	845	3	3	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0004	845	2	2	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0005	845	2	0	0	2	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0006	845	1	0	0	0	0	1	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0007	845	1	0	0	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0008	845	1	1	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0009	845	1	0	1	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0010	845	1	0	0	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	a0011	845	1	1	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF2_chr7_151206484_151232205	1/1	a0001	623	383	89	78	154	14	46	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	a0002	623	7	7	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF3_chr3_184181199_184199005	1/1	a0001	709	382	86	67	172	12	43	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0002	709	11	0	6	0	2	3	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0003	709	10	8	2	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0004	709	4	0	0	4	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0005	709	3	0	0	3	0	0	copy fasta	ABCF3	chr3	184181199	184199005