JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARID1B_chr6_156772378_157215779	0/0	a0021	2375	1	0	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0022	2375	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0023	2374	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0024	2374	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0025	2371	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0026	2371	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0027	2371	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0028	2379	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	a0029	2373	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID2_chr12_45724706_45913037	1/1	a0001	1835	285	67	63	103	12	38	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0002	1835	13	0	0	13	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0003	1835	5	5	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0004	1835	3	0	0	3	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0005	1835	2	0	0	2	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0006	1835	2	0	0	2	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0007	1835	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0008	1835	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0009	1835	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0010	1835	1	0	1	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0011	1835	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0012	1835	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0013	1835	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	a0014	1835	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID3A_chr19_921035_980939	0/1	a0001	593	216	55	42	72	11	35	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	1/0	a0002	593	117	17	25	62	3	9	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0003	594	14	12	2	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0004	593	5	4	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0005	593	3	3	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0006	593	2	0	0	0	0	2	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0007	593	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0008	593	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0009	593	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0010	593	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0011	593	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0012	593	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	a0013	593	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3B_chr15_74536220_74603131	1/1	a0001	560	328	72	53	157	15	29	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	a0002	560	3	0	0	0	0	3	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	a0003	560	2	0	0	2	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	a0004	560	1	1	0	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	a0005	560	1	0	1	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	a0006	560	1	0	0	1	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	a0007	560	1	0	0	0	1	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	a0008	560	1	1	0	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3C_chr9_34616049_34634066	0/0	a0001	412	220	40	50	100	6	24	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	1/1	a0002	412	172	27	28	89	8	18	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	a0003	412	26	25	1	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	a0004	412	4	4	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	a0005	412	2	0	0	0	2	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	a0006	412	2	0	0	2	0	0	copy fasta	ARID3C	chr9	34616049	34634066