JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	SAS	aseq	genename	chr	start	end
PCDH15_chr10_53797771_54806231	0/0	a0007	1740	3	1	1	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/1	a0008	1740	3	0	2	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0009	1740	2	0	2	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0010	1740	2	2	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0011	1740	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0012	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0013	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0014	1740	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0015	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0016	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0017	1741	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0018	1741	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0019	1740	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0020	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0021	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0022	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0023	1740	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0024	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0025	1741	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0026	1684	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0027	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0028	1741	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0029	1740	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0030	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0031	1741	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0032	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0033	1741	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0034	1740	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0035	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0036	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	a0037	1740	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53816099_54806231	1/1	a0001	1955	19	7	8	1	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0002	1955	15	9	3	1	2	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0003	1955	12	5	4	1	2	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0004	1955	8	2	2	2	2	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0005	1955	5	2	1	0	2	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0006	1955	4	2	0	1	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0007	1955	2	0	2	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0008	1955	2	1	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0009	1955	2	0	1	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0010	1955	2	1	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0011	1955	1	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0012	1955	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0013	1955	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0014	1955	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0015	1955	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0016	1954	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0017	1955	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0018	1955	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0019	1955	1	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231