JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDH15_chr10_53816099_54806231	0/0	a0020	1955	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0021	1954	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0022	1955	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0023	1954	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0024	1955	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0025	1955	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0026	1954	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0027	1934	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0028	1955	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0029	1955	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0030	1954	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0031	1899	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0032	1955	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	a0033	1955	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH17_chr13_57626744_57734311	1/1	a0001	1159	303	70	67	128	11	25	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	a0002	1159	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	a0003	1159	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	a0004	1159	1	0	0	0	1	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	a0005	1159	1	0	1	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	a0006	1159	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	a0007	1159	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	a0008	1159	1	0	0	0	0	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH18_chr4_137513918_137537494	1/1	a0001	1135	394	87	70	175	18	42	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0002	1135	3	0	0	0	0	3	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0003	1135	2	2	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0004	1135	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0005	1135	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0006	1135	1	0	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0007	1135	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0008	1135	1	0	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0009	1135	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	a0010	1135	1	0	0	0	0	1	copy fasta	PCDH18	chr4	137513918	137537494
PCDH19_chrX_100286644_100415273	1/1	a0001	1148	263	75	56	91	9	30	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	a0002	1148	9	0	0	9	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	a0003	1148	5	0	0	5	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	a0004	814	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	a0005	1148	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	a0006	1148	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	a0007	1148	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH1_chr5_141848090_141883410	1/1	a0001	1237	242	20	50	129	15	26	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0002	1237	95	68	14	5	1	7	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0003	1237	34	3	7	17	0	7	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0004	1237	3	0	0	2	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0005	1237	1	0	0	1	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0006	1237	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0007	1237	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0008	1237	1	1	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0009	1237	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0010	1237	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0011	1237	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410