JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDH1_chr5_141848090_141883410	0/0	a0012	1237	1	1	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0013	1237	1	1	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	a0014	1237	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH20_chr13_61404685_61420849	1/1	a0001	951	380	83	72	172	17	34	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	a0002	951	67	7	4	43	1	12	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	a0003	951	6	6	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	a0004	951	2	0	0	2	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	a0005	951	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	a0006	951	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	a0007	951	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH7_chr4_30715369_31151800	0/0	a0001	1255	207	56	27	94	4	26	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	a0002	1255	3	3	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	a0003	1255	1	0	1	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	a0004	1255	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	a0005	1255	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	a0006	1255	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH8_chr13_52837889_52853640	1/1	a0001	1070	252	61	42	107	11	29	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0002	1070	136	12	25	78	6	15	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0003	1070	22	8	11	2	0	1	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0004	1070	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0005	1070	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0006	1070	2	0	1	0	1	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0007	1070	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0008	1070	2	0	0	2	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0009	1070	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0010	1070	1	0	0	0	0	1	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0011	1070	1	1	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0012	1070	1	1	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0013	1070	1	0	1	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0014	1070	1	1	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	a0015	1070	1	0	0	1	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH9_chr13_66297834_67235336	0/0	a0001	1237	71	33	18	10	2	8	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	a0002	1237	3	3	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	a0003	1237	2	2	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	a0004	1237	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	a0005	1237	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	a0006	1237	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	a0007	1237	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDHA10_chr5_140850897_141017347	1/1	a0001	948	104	21	20	45	2	14	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0002	948	96	15	16	47	4	14	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0003	948	23	17	4	1	1	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0004	948	8	7	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0005	948	7	6	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0006	948	5	1	4	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0007	948	3	0	0	3	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0008	948	2	2	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0009	948	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0010	948	1	0	0	0	1	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0011	948	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0012	948	1	0	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347