JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHA10_chr5_140850897_141017347	0/0	a0013	948	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0014	948	1	0	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0015	948	1	0	0	0	0	1	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0016	948	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0017	948	1	0	0	0	0	1	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0018	948	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0019	948	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	a0020	948	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA11_chr5_140863957_141017347	1/1	a0001	949	236	71	42	85	7	29	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0002	949	10	0	1	9	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0003	949	4	4	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0004	949	2	2	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0005	949	1	0	1	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0006	949	1	0	0	0	1	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0007	949	1	1	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0008	949	1	0	1	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0009	470	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0010	949	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0011	949	1	0	1	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	a0012	949	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA12_chr5_140870308_141017347	1/1	a0001	941	229	68	38	88	7	26	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0002	941	10	1	2	7	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0003	941	4	3	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0004	608	2	0	0	0	0	2	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0005	941	2	1	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0006	941	2	2	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0007	941	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0008	941	1	0	0	0	0	1	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0009	941	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0010	941	1	0	0	0	0	1	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0011	941	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0012	941	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0013	941	1	0	0	0	1	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0014	941	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0015	646	1	0	0	1	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0016	941	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	a0017	941	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA13_chr5_140877124_141017347	1/1	a0001	950	251	78	45	92	7	27	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0002	950	1	1	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0003	950	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0004	950	1	1	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0005	950	1	0	1	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0006	950	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0007	950	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0008	950	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0009	950	1	0	0	0	1	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	a0010	950	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0001	950	91	30	22	29	2	8	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	1/1	a0002	950	87	32	12	28	3	10	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0003	950	5	5	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347