JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHA1_chr5_140781140_141017347	0/0	a0004	950	4	3	1	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0005	950	2	0	0	2	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0006	950	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0007	950	1	0	0	0	0	1	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0008	950	1	0	0	0	0	1	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0009	950	1	0	1	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0010	950	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0011	950	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0012	950	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0013	950	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0014	950	1	0	0	0	1	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0015	950	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	a0016	950	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0001	948	94	30	22	31	3	8	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	1/1	a0002	948	75	21	9	31	3	9	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0003	948	16	15	1	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0004	948	5	5	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0005	948	3	0	2	0	0	1	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0006	948	2	2	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0007	948	1	1	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0008	948	1	0	1	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0009	948	1	0	0	1	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0010	948	1	0	0	1	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0011	435	1	0	0	0	0	1	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0012	948	1	0	0	0	0	1	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	a0013	948	1	0	1	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA3_chr5_140796057_141017347	0/0	a0001	950	102	32	23	31	3	13	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	1/1	a0002	950	67	19	8	27	2	9	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	a0003	950	19	18	1	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	a0004	950	15	6	3	4	1	1	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	a0005	950	2	0	0	2	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	a0006	950	1	0	1	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	a0007	950	1	0	0	0	0	1	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	a0008	950	1	1	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA4_chr5_140802068_141017347	1/1	a0001	947	83	23	10	35	3	10	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0002	947	50	2	9	29	2	8	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0003	947	35	22	9	2	1	1	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0004	947	13	12	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0005	947	9	8	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0006	947	5	5	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0007	947	4	0	0	0	0	4	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0008	947	4	0	4	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0009	947	2	2	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0010	947	1	0	0	0	0	1	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0011	947	1	0	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0012	947	1	0	0	1	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0013	947	1	0	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0014	947	1	0	0	1	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0015	947	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	a0016	947	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347