JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHA5_chr5_140816613_141017347	0/0	a0001	936	102	28	23	35	3	13	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	1/1	a0002	936	80	19	11	35	3	10	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0003	936	15	14	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0004	936	4	4	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0005	936	4	4	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0006	936	4	4	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0007	936	2	2	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0008	936	2	2	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0009	936	2	0	0	2	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0010	936	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0011	936	1	0	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0012	936	1	0	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0013	936	1	0	0	0	0	1	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	a0014	936	1	0	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA6_chr5_140822960_141017347	1/1	a0001	950	192	47	33	78	8	24	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0002	950	12	10	2	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0003	950	12	11	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0004	950	6	6	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0005	950	2	2	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0006	950	2	0	2	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0007	950	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0008	950	1	0	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0009	950	1	0	0	0	0	1	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0010	950	1	0	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0011	950	1	0	0	0	0	1	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0012	950	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0013	950	1	0	0	1	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0014	950	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0015	950	1	0	0	1	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	a0016	950	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA7_chr5_140829269_141017347	1/1	a0001	937	113	42	14	40	5	10	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0002	937	100	28	17	36	2	17	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0003	937	5	0	2	3	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0004	937	5	4	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0005	937	4	0	4	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0006	937	4	0	1	3	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0007	937	4	3	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0008	937	2	2	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0009	6	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0010	937	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0011	937	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0012	937	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0013	937	1	0	0	0	0	1	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0014	341	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0015	937	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0016	937	1	0	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0017	937	1	0	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0018	937	1	1	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	a0019	937	1	0	0	0	1	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA8_chr5_140836187_141017347	1/1	a0001	950	97	21	15	44	5	10	copy fasta	PCDHA8	chr5	140836187	141017347