JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHA8_chr5_140836187_141017347	0/0	a0002	950	74	7	11	37	2	17	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0003	950	18	11	6	0	1	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0004	950	12	10	2	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0005	416	11	2	4	3	0	2	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0006	950	9	8	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0007	950	6	6	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0008	950	5	5	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0009	950	5	0	0	5	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0010	950	4	3	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0011	950	3	0	3	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0012	416	3	3	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0013	950	1	0	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0014	950	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0015	950	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0016	950	1	0	0	0	0	1	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0017	950	1	0	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0018	416	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0019	950	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0020	950	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0021	950	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0022	950	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	a0023	950	1	0	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA9_chr5_140843382_141017347	1/0	a0001	950	97	23	15	44	2	12	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0002	950	65	12	7	37	1	8	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0003	950	20	12	7	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/1	a0004	950	19	2	4	7	1	4	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0005	950	8	7	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0006	950	5	5	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0007	950	5	0	4	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0008	950	4	3	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0009	950	4	3	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0010	950	3	0	2	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0011	950	3	0	0	2	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0012	950	3	3	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0013	950	2	2	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0014	950	2	1	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0015	950	2	0	2	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0016	950	2	0	2	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0017	950	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0018	950	1	0	0	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0019	950	1	0	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0020	950	1	0	0	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0021	950	1	0	0	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0022	950	1	0	0	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0023	950	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0024	950	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0025	950	1	0	0	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0026	950	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0027	950	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	a0028	950	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347