JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHAC1_chr5_140921299_141017347	0/1	a0001	963	159	54	29	58	3	14	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	1/0	a0002	963	104	15	19	47	6	16	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0003	963	5	5	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0004	963	2	2	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0005	963	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0006	963	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0007	963	1	0	0	0	0	1	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0008	963	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0009	963	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0010	963	1	0	0	0	0	1	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0011	963	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0012	963	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0013	963	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	a0014	963	1	0	0	0	1	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC2_chr5_140961476_141017347	1/1	a0001	1007	311	77	57	128	14	33	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	a0002	1005	10	10	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	a0003	1007	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	a0004	1007	1	0	1	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	a0005	1007	1	0	0	0	0	1	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHB10_chr5_141187353_141200647	1/0	a0001	800	149	22	32	66	8	20	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0002	798	140	1	21	105	4	9	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0003	798	51	23	10	12	4	2	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/1	a0004	800	45	2	4	31	2	5	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0005	798	22	17	5	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0006	800	8	7	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0007	800	5	5	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0008	798	4	3	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0009	800	4	2	2	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0010	800	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0011	800	2	0	2	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0012	800	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0013	798	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0014	798	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0015	800	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0016	800	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0017	798	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0018	800	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0019	800	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0020	800	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0021	800	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0022	798	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0023	798	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0024	798	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0025	798	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0026	798	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0027	800	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0028	798	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0029	800	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0030	800	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0031	800	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647