JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHB10_chr5_141187353_141200647	0/0	a0032	40	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	a0033	96	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB11_chr5_141194627_141208779	1/1	a0001	797	190	22	38	99	7	22	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0002	797	135	1	21	100	4	9	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0003	797	46	16	11	12	4	3	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0004	797	23	21	2	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0005	797	15	15	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0006	797	6	6	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0007	797	5	0	5	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0008	797	5	0	1	0	3	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0009	797	5	5	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0010	797	4	2	2	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0011	797	4	3	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0012	797	2	0	0	0	0	2	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0013	797	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0014	797	1	0	0	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0015	797	1	0	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	a0016	797	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB12_chr5_141203719_141217571	1/0	a0001	795	264	27	52	145	10	29	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0002	795	82	47	17	11	4	3	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/1	a0003	795	48	6	5	28	2	6	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0004	795	4	0	0	4	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0005	795	4	0	0	4	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0006	795	4	4	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0007	795	3	0	3	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0008	795	3	1	2	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0009	795	2	2	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0010	795	2	2	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0011	795	2	2	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0012	795	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0013	795	1	0	0	0	0	1	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0014	795	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0015	795	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0016	795	1	0	0	0	0	1	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0017	795	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0018	795	1	0	1	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0019	795	1	0	1	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0020	795	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0021	795	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0022	795	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0023	795	1	0	1	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0024	795	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	a0025	773	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB13_chr5_141208919_141223979	0/0	a0000	0	3	3	0	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	1/0	a0001	798	257	30	47	144	8	27	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/1	a0002	798	58	10	5	32	2	8	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0003	798	37	9	11	13	2	2	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0004	798	36	31	5	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0005	798	7	0	5	0	2	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0006	798	6	0	0	6	0	0	copy fasta	PCDHB13	chr5	141208919	141223979