JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHB13_chr5_141208919_141223979	0/0	a0007	798	5	5	0	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0008	798	3	2	1	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0009	798	2	2	0	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0010	798	2	2	0	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0011	798	2	2	0	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0012	798	1	0	0	1	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0013	798	1	0	0	0	0	1	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0014	798	1	0	0	1	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0015	798	1	0	0	1	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0016	798	1	0	0	1	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0017	798	1	0	1	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0018	798	1	0	0	0	0	1	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0019	798	1	0	0	1	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0020	798	1	0	1	0	0	0	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB13_chr5_141208919_141223979	0/0	a0021	798	1	0	0	0	0	1	copy fasta	PCDHB13	chr5	141208919	141223979
PCDHB14_chr5_141218343_141232759	1/1	a0001	798	380	58	72	195	15	38	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0002	798	22	17	5	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0003	798	15	0	0	14	1	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0004	798	4	3	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0005	798	4	4	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0006	798	4	4	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0007	798	2	0	1	0	0	1	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0008	798	2	2	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0009	798	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0010	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0011	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0012	798	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0013	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0014	798	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0015	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0016	798	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0017	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0018	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0019	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0020	798	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0021	798	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0022	798	1	0	0	0	0	1	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	a0023	798	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB15_chr5_141240395_141254365	1/0	a0001	787	143	21	39	56	6	20	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0002	787	114	1	17	85	3	8	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/1	a0003	787	85	36	9	29	2	8	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0004	787	32	5	8	14	2	3	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0005	787	22	17	5	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0006	787	3	0	0	0	0	3	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0007	787	3	0	0	3	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0008	787	3	3	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0009	787	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0010	787	2	2	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0011	787	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0012	787	2	2	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365