JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARID3C_chr9_34616049_34634066	0/0	a0007	412	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	a0008	412	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	a0009	412	1	0	1	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	a0010	412	1	0	0	1	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID4A_chr14_58293555_58378876	1/1	a0001	1257	183	47	36	67	8	23	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0002	1257	99	30	7	52	1	9	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0003	1257	2	1	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0004	1257	2	1	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0005	1257	1	0	0	0	1	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0006	1257	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0007	1257	1	0	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0008	1257	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0009	1257	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0010	1257	1	1	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0011	1257	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	a0012	1257	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4B_chr1_235161902_235333179	1/1	a0001	1312	234	49	48	95	8	32	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0002	1312	20	16	4	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0003	1311	11	8	2	1	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0004	1312	2	0	2	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0005	1312	1	0	0	0	0	1	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0006	1311	1	0	0	0	0	1	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0007	1312	1	0	1	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0008	1312	1	0	1	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	a0009	1312	1	1	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID5A_chr2_96531752_96557634	1/1	a0001	594	362	94	58	158	16	34	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	a0002	594	7	0	3	4	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	a0003	594	1	0	1	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	a0004	594	1	0	1	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	a0005	594	1	0	1	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	a0006	594	1	0	0	1	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	a0007	594	1	0	0	1	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5B_chr10_61896699_62101944	0/0	a0001	1188	239	73	38	88	14	26	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	a0002	1188	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	a0003	1188	1	1	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	a0004	1188	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARIH1_chr15_72469330_72607987	1/1	a0001	557	256	89	51	96	6	12	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	a0002	558	5	1	3	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	a0003	557	1	0	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH2_chr3_48913842_48991382	1/1	a0001	493	200	80	40	46	14	18	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	a0002	493	2	0	2	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARK2C_chr18_46329018_46468140	1/1	a0001	346	259	80	52	84	8	33	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	a0002	346	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2N_chr18_46169034_46271992	1/0	a0001	404	208	60	45	74	9	19	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/1	a0002	403	107	22	12	54	3	15	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	a0003	404	3	3	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	a0004	404	1	1	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	a0005	404	1	0	1	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARL10_chr5_176360487_176386909	1/1	a0001	244	417	97	76	182	16	44	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	a0002	244	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909