JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHB15_chr5_141240395_141254365	0/0	a0013	787	2	0	2	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0014	787	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0015	787	1	0	0	0	1	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0016	787	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0017	787	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0018	787	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	a0019	787	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB16_chr5_141177387_141191226	1/0	a0001	776	151	28	32	63	8	19	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0002	776	137	1	17	103	4	12	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/1	a0003	776	76	28	12	29	2	4	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0004	776	50	18	12	13	4	3	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0005	776	4	3	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0006	776	4	2	2	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0007	776	4	4	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0008	776	3	0	3	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0009	595	3	0	0	3	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0010	775	3	1	2	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0011	776	2	2	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0012	776	2	2	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0013	776	2	2	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0014	776	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0015	776	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0016	776	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0017	776	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0018	776	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0019	776	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0020	776	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0021	776	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0022	776	1	0	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0023	776	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	a0024	776	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB1_chr5_141046374_141064346	1/1	a0001	818	382	72	67	189	12	40	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0002	818	23	23	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0003	818	5	0	4	0	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0004	818	4	3	1	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0005	818	2	2	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0006	818	1	0	0	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0007	818	1	0	0	0	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0008	818	1	0	0	0	1	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0009	818	1	0	0	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0010	149	1	0	0	0	1	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	a0011	818	1	0	0	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB2_chr5_141089615_141103703	0/0	a0000	0	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	1/1	a0001	798	182	47	33	70	7	23	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0002	798	115	9	15	68	5	18	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0003	798	31	8	11	10	1	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0004	798	28	1	2	23	1	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0005	798	23	23	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0006	798	20	4	2	14	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0007	798	5	2	3	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703