JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHB2_chr5_141089615_141103703	0/0	a0008	798	2	0	0	2	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0009	798	2	2	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0010	798	1	0	1	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0011	798	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0012	798	1	0	0	0	0	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0013	798	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0014	798	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0015	798	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0016	798	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0017	798	1	0	1	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	a0018	798	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB3_chr5_141095473_141108827	0/1	a0001	796	294	52	51	138	14	38	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0002	796	51	11	12	25	1	2	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0003	796	29	1	2	24	1	1	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0004	796	22	22	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0005	796	9	0	0	9	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0006	796	4	4	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0007	796	3	1	2	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0008	796	3	3	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0009	796	2	2	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	1/0	a0010	796	1	0	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0011	796	1	0	1	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0012	796	1	0	0	1	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0013	796	1	0	0	0	0	1	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0014	796	1	0	0	1	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0015	796	1	1	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	a0016	61	1	1	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB4_chr5_141116818_141130623	1/1	a0001	795	327	69	49	152	12	43	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0002	795	55	11	15	26	1	2	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0003	795	32	2	2	24	1	3	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0004	795	8	0	0	7	1	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0005	795	6	6	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0006	795	3	3	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0007	795	2	2	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0008	795	2	2	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0009	795	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0010	795	1	0	1	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0011	795	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0012	795	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0013	795	1	0	0	0	1	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0014	795	1	0	1	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0015	795	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0016	795	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	a0017	795	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB5_chr5_141130206_141143615	1/1	a0001	795	374	82	48	184	14	44	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0002	795	37	8	16	10	1	2	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0003	795	20	3	2	15	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0004	795	20	0	6	13	0	1	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0005	795	7	0	5	0	1	1	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0006	795	4	2	2	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615