JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHB5_chr5_141130206_141143615	0/0	a0007	795	2	2	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0008	795	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0009	795	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0010	795	1	0	1	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0011	795	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0012	795	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	a0013	795	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB6_chr5_141145057_141158287	0/0	a0000	0	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	1/0	a0001	794	162	33	35	69	6	18	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0002	794	150	1	16	119	4	10	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/1	a0003	794	53	17	5	22	2	6	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0004	794	31	4	8	14	3	2	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0005	794	26	22	4	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0006	794	6	6	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0007	794	5	0	0	5	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0008	794	5	1	3	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0009	794	3	3	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0010	794	3	0	3	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0011	794	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0012	794	2	0	2	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0013	794	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0014	794	2	0	0	0	0	2	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0015	794	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0016	794	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0017	794	1	0	0	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0018	794	1	0	0	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0019	794	1	0	0	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0020	794	1	1	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0021	794	1	0	0	0	1	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0022	794	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0023	794	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	a0024	793	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB7_chr5_141167644_141181383	1/0	a0001	793	131	26	28	53	5	18	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0002	793	117	1	18	85	3	10	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/1	a0003	793	42	2	4	27	2	6	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0004	793	26	13	3	10	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0005	793	21	16	5	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0006	793	19	1	7	4	4	3	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0007	793	11	9	2	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0008	793	5	3	1	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0009	793	5	0	0	5	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0010	793	5	5	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0011	793	4	3	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0012	793	4	4	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0013	631	4	2	2	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0014	793	3	0	0	3	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0015	793	3	1	1	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0016	793	2	2	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0017	793	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0018	793	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383