JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHB7_chr5_141167644_141181383	0/0	a0019	793	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0020	361	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0021	793	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0022	793	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0023	793	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0024	793	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0025	597	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0026	793	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0027	793	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0028	793	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0029	679	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	a0030	793	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB8_chr5_141172790_141185539	0/0	a0001	801	115	1	16	89	3	6	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0002	801	74	22	11	34	2	5	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	1/0	a0003	801	54	3	18	17	4	11	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/1	a0004	801	43	2	5	30	2	3	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0005	801	30	5	6	13	4	2	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0006	801	16	16	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0007	801	10	10	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0008	801	7	7	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0009	801	6	0	0	6	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0010	801	5	5	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0011	801	5	5	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0012	801	5	0	5	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0013	801	4	0	0	4	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0014	801	4	3	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0015	801	4	1	2	0	0	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0016	801	3	0	0	3	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0017	801	3	2	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0018	572	2	2	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0019	794	2	0	0	2	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0020	794	2	0	2	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0021	801	2	2	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0022	801	2	1	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0023	801	2	0	0	0	0	2	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0024	801	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0025	801	1	0	0	0	0	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0026	801	1	0	0	0	0	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0027	801	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0028	801	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0029	801	1	1	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0030	801	1	0	0	0	1	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0031	801	1	1	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0032	794	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0033	801	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0034	801	1	1	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0035	801	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0036	801	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	a0037	801	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB9_chr5_141182161_141196541	0/0	a0000	0	3	1	0	1	0	1	copy fasta	PCDHB9	chr5	141182161	141196541