JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHB9_chr5_141182161_141196541	1/0	a0001	797	136	28	36	48	8	15	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0002	797	131	1	20	95	4	11	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/1	a0003	797	61	16	7	31	2	4	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0004	797	38	7	11	13	4	3	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0005	797	18	15	3	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0006	797	18	0	0	16	0	2	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0007	797	12	11	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0008	797	9	0	0	9	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0009	797	6	6	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0010	797	4	3	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0011	797	2	0	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0012	797	2	2	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0013	797	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0014	797	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0015	91	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0016	797	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0017	797	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0018	797	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0019	797	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0020	797	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0021	797	1	0	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0022	797	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0023	797	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0024	797	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0025	797	1	0	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0026	797	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0027	797	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	a0028	797	1	0	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHGA10_chr5_141407987_141517975	0/0	a0001	936	204	77	34	71	8	14	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	1/0	a0002	936	87	10	17	47	3	9	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/1	a0003	729	3	0	2	0	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0004	936	2	0	2	0	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0005	193	1	0	0	0	0	1	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0006	936	1	0	1	0	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0007	936	1	0	0	1	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0008	936	1	0	0	0	0	1	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0009	936	1	0	1	0	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0010	936	1	0	0	0	0	1	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0011	936	1	1	0	0	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0012	936	1	0	1	0	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0013	936	1	0	0	0	1	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA10_chr5_141407987_141517975	0/0	a0014	20	1	0	0	1	0	0	copy fasta	PCDHGA10	chr5	141407987	141517975
PCDHGA11_chr5_141416051_141517975	1/1	a0001	935	251	73	52	89	11	24	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0002	935	45	7	8	27	1	2	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0003	935	3	2	1	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0004	935	2	2	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0005	935	2	2	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0006	935	2	0	0	0	0	2	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0007	935	1	1	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0008	935	1	0	1	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975