JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHGA11_chr5_141416051_141517975	0/0	a0009	935	1	0	0	1	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0010	935	1	1	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	a0011	935	1	0	0	1	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA12_chr5_141425507_141517975	1/1	a0001	932	291	70	66	117	11	25	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0002	932	10	8	0	0	1	1	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0003	932	5	5	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0004	932	2	2	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0005	932	2	2	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0006	932	2	2	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0007	932	1	0	1	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0008	932	1	0	1	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0009	932	1	0	0	1	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0010	932	1	0	0	0	0	1	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0011	932	1	0	0	0	0	1	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	a0012	932	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0001	931	189	53	44	66	10	16	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	1/0	a0002	931	25	6	0	17	1	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/1	a0003	931	23	8	6	2	2	4	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0004	931	10	0	2	1	1	6	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0005	931	7	6	1	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0006	931	4	4	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0007	931	3	0	0	3	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0008	931	2	1	1	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0009	931	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0010	931	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0011	931	1	0	0	1	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0012	931	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	a0013	931	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA2_chr5_141333760_141517975	1/1	a0001	932	160	63	30	43	10	12	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0002	932	62	4	9	38	3	8	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0003	932	28	8	7	11	1	1	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0004	932	7	6	1	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0005	932	4	1	3	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0006	932	4	0	0	0	0	4	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0007	932	2	0	0	2	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0008	932	1	0	0	1	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0009	932	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0010	932	1	0	0	1	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0011	932	1	0	0	0	0	1	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	a0012	932	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0001	932	115	36	25	37	6	11	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	1/0	a0002	932	77	16	13	36	2	9	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/1	a0003	932	40	25	6	0	5	3	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0004	932	13	0	0	13	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0005	932	9	0	2	7	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0006	932	6	1	4	0	1	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0007	932	3	2	1	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0008	932	2	2	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0009	932	1	0	1	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0010	932	1	0	0	1	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975