JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHGA3_chr5_141338829_141517975	0/0	a0011	932	1	0	0	0	0	1	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0012	932	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	a0013	932	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA4_chr5_141350021_141517975	1/0	a0001	962	183	38	43	77	8	16	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/1	a0002	962	45	21	8	7	5	3	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0003	962	14	0	1	5	1	7	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0004	962	13	11	2	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0005	962	5	5	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0006	962	5	4	1	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0007	962	3	0	0	3	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0008	962	2	2	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0009	962	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0010	962	1	0	0	1	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0011	962	1	0	1	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	a0012	309	1	0	0	1	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA5_chr5_141359162_141517975	1/1	a0001	931	261	71	52	97	13	26	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0002	931	13	11	2	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0003	931	8	0	2	6	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0004	931	2	2	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0005	931	2	0	0	2	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0006	931	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0007	931	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0008	931	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0009	931	1	0	0	0	1	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0010	931	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	a0011	931	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA6_chr5_141368891_141517975	1/1	a0001	932	273	76	49	112	13	21	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0002	932	6	6	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0003	932	2	1	0	0	0	1	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0004	932	2	0	0	0	0	2	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0005	932	2	2	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0006	932	1	0	0	1	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0007	932	1	0	0	1	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0008	932	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0009	932	1	0	0	0	1	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0010	932	1	0	0	0	0	1	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0011	932	1	0	0	0	0	1	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	a0012	932	1	0	1	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA7_chr5_141377742_141517975	0/1	a0001	932	128	41	30	35	9	12	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	1/0	a0002	932	93	16	19	42	3	12	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0003	932	31	3	1	26	0	1	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0004	932	25	13	3	7	1	1	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0005	932	4	4	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0006	932	3	3	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0007	932	3	2	1	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0008	932	1	0	0	1	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0009	932	1	0	0	1	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0010	932	1	0	0	0	1	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0011	932	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	a0012	932	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975