JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHGA8_chr5_141387633_141517975	1/1	a0001	932	177	62	33	54	7	19	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0002	932	49	4	15	25	4	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0003	189	45	9	6	27	1	2	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0004	932	10	7	1	0	1	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0005	932	9	0	2	7	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0006	932	2	2	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0007	932	1	0	0	0	0	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0008	932	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0009	932	1	0	0	0	0	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0010	932	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0011	932	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0012	932	1	0	1	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0013	932	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0014	932	1	0	0	0	1	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0015	932	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	a0016	932	1	0	0	0	0	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA9_chr5_141397778_141517975	1/1	a0001	932	291	83	56	108	14	28	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0002	380	2	0	0	2	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0003	932	2	2	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0004	932	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0005	932	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0006	932	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0007	932	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0008	932	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0009	932	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	a0010	932	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGB1_chr5_141345099_141517975	1/0	a0001	927	242	72	48	88	10	23	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/1	a0002	927	21	9	5	0	4	2	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0003	927	4	0	0	4	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0004	927	3	0	0	3	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0005	927	2	2	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0006	927	1	0	1	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0007	927	1	1	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0008	927	1	0	0	1	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0009	927	1	0	0	1	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0010	927	1	0	0	1	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	a0011	927	1	0	0	0	0	1	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB2_chr5_141354994_141517975	1/0	a0001	931	176	43	34	70	7	21	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0002	931	45	11	9	22	1	2	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/1	a0003	931	35	22	6	0	4	2	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0004	931	8	0	2	6	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0005	931	8	6	0	0	1	1	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0006	931	6	1	4	0	1	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0007	931	2	2	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0008	931	2	0	0	2	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0009	931	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0010	133	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0011	931	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0012	931	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	a0013	931	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975