JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHGB2_chr5_141354994_141517975	0/0	a0014	488	1	0	1	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0001	929	170	56	29	66	7	12	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	1/0	a0002	929	89	10	19	45	3	11	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/1	a0003	929	22	9	6	0	4	2	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0004	929	6	6	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0005	929	4	3	1	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0006	929	1	0	1	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0007	929	1	0	0	0	0	1	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0008	929	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0009	929	1	0	0	1	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	a0010	929	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB4_chr5_141382698_141517975	1/1	a0001	923	272	84	46	105	13	22	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0002	923	7	0	0	7	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0003	921	6	2	2	0	0	2	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0004	923	2	0	0	0	0	2	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0005	923	2	0	2	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0006	923	1	0	0	1	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0007	923	1	0	0	1	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0008	923	1	0	1	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0009	923	1	0	0	0	1	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	a0010	923	1	0	1	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB5_chr5_141392947_141517975	1/1	a0001	923	205	58	47	75	11	12	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0002	923	49	13	6	27	1	2	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0003	923	22	3	1	9	1	8	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0004	923	6	5	1	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0005	923	3	3	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0006	923	3	2	1	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0007	923	2	0	0	2	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0008	923	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0009	923	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0010	923	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0011	923	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0012	923	1	0	0	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0013	923	1	0	0	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0014	923	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0015	923	1	0	0	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0016	923	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	a0017	923	1	0	0	0	1	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB6_chr5_141403021_141517975	1/0	a0001	930	163	37	38	70	5	12	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/1	a0002	930	96	35	15	34	6	5	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0003	930	24	6	1	9	1	7	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0004	930	3	3	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0005	930	3	3	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0006	930	2	0	0	0	0	2	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0007	930	2	0	0	2	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0008	930	2	2	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0009	930	1	0	1	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0010	930	1	0	0	1	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0011	930	1	1	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0012	930	1	0	0	1	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975