JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCDHGB6_chr5_141403021_141517975	0/0	a0013	930	1	0	1	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0014	930	1	1	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	a0015	89	1	0	0	1	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB7_chr5_141412677_141517975	1/1	a0001	929	247	68	46	100	10	21	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0002	929	22	3	10	7	1	1	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0003	929	21	8	3	8	1	1	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0004	929	6	5	1	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0005	929	2	0	0	0	0	2	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0006	929	1	0	0	0	0	1	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0007	929	1	0	0	1	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0008	929	1	0	0	1	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0009	929	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0010	929	1	0	0	1	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0011	929	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0012	929	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	a0013	929	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGC3_chr5_141470966_141517975	1/1	a0001	934	340	88	69	128	18	35	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0002	934	2	2	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0003	934	2	2	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0004	934	1	0	1	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0005	934	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0006	934	1	0	0	0	0	1	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0007	934	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0008	934	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	a0009	934	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC4_chr5_141480030_141517975	1/1	a0001	938	328	77	70	128	17	34	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	a0002	938	19	16	1	0	1	1	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	a0003	938	2	0	0	2	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	a0004	938	1	0	0	0	0	1	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	a0005	938	1	0	0	1	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	a0006	938	1	0	0	1	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	a0007	938	1	0	1	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	a0008	938	1	1	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC5_chr5_141484081_141517975	1/1	a0001	944	284	82	49	104	15	32	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	a0002	944	76	12	22	36	3	3	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	a0003	944	1	0	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	a0004	944	1	0	0	0	0	1	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	a0005	944	1	0	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	a0006	944	1	0	1	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCED1A_chr20_2830314_2845655	1/1	a0001	454	420	86	75	200	16	41	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	a0002	454	12	1	1	9	0	1	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	a0003	454	2	2	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	a0004	454	1	1	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	a0005	454	1	0	0	1	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1B_chr12_47074621_47241660	1/1	a0001	432	318	85	52	135	16	28	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	a0002	432	2	2	0	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	a0003	432	1	0	0	1	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	a0004	432	1	1	0	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCF11_chr11_83152131_83190794	1/1	a0001	1686	337	56	58	168	14	39	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0002	1686	21	17	4	0	0	0	copy fasta	PCF11	chr11	83152131	83190794