JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARL11_chr13_49623507_49638872	1/0	a0001	196	342	87	42	169	10	33	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/1	a0002	196	99	6	32	42	6	12	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	a0003	196	6	0	3	2	0	1	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	a0004	148	3	0	1	0	0	2	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	a0005	196	3	2	1	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	a0006	196	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	a0007	196	1	0	1	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	a0008	196	1	1	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL13A_chrX_100964708_100995831	1/1	a0001	256	249	63	46	105	8	25	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	a0002	256	29	12	11	2	1	3	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	a0003	256	1	1	0	0	0	0	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	a0004	256	1	0	0	0	0	1	copy fasta	ARL13A	chrX	100964708	100995831
ARL13B_chr3_93975155_94060678	1/1	a0001	428	219	64	45	70	8	30	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	a0002	428	23	1	4	12	2	4	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	a0003	284	17	6	7	1	0	3	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	a0004	428	1	1	0	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	a0005	428	1	0	0	0	0	1	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	a0006	428	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	a0007	428	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	a0008	428	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL14EPL_chr5_116027472_116064489	1/1	a0001	152	458	90	80	224	18	44	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	a0002	152	2	0	0	2	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	a0003	152	1	0	1	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	a0004	152	1	0	1	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EP_chr11_30318104_30343223	1/1	a0001	260	395	89	74	176	10	44	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	a0002	260	5	5	0	0	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14_chr3_160672160_160683448	1/1	a0001	192	420	84	84	188	16	46	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	a0002	192	11	11	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	a0003	192	1	0	0	1	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	a0004	192	1	0	0	1	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	a0005	192	1	1	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL15_chr5_53878942_54315573	1/1	a0001	204	206	72	48	46	12	26	copy fasta	ARL15	chr5	53878942	54315573
ARL16_chr17_81676187_81688797	1/1	a0001	173	442	94	80	204	16	46	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	a0002	173	2	0	0	2	0	0	copy fasta	ARL16	chr17	81676187	81688797
ARL17A_chr17_46547756_46584691	0/0	a0001	177	135	49	17	48	9	12	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	a0002	177	8	1	4	0	2	1	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	a0003	175	2	0	1	0	1	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	a0004	177	1	0	0	0	0	1	copy fasta	ARL17A	chr17	46547756	46584691
ARL17B_chr17_46329902_46366766	0/0	a0001	177	26	16	2	4	0	4	copy fasta	ARL17B	chr17	46329902	46366766
ARL1_chr12_101388116_101412772	1/1	a0001	181	397	84	70	177	18	46	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	a0002	164	1	0	0	1	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL2BP_chr16_57240259_57258635	1/1	a0001	163	369	88	61	166	18	34	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	a0002	163	3	0	3	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2_chr11_65009160_65027184	1/1	a0001	184	186	25	37	86	4	32	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	a0002	184	151	69	31	33	12	6	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	a0003	184	1	1	0	0	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	a0004	184	1	0	0	1	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	a0005	184	1	1	0	0	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL3_chr10_102668731_102719397	1/1	a0001	182	424	94	78	198	12	40	copy fasta	ARL3	chr10	102668731	102719397
ARL4A_chr7_12682633_12695958	1/1	a0001	200	428	100	74	188	18	46	copy fasta	ARL4A	chr7	12682633	12695958