JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCF11_chr11_83152131_83190794	0/0	a0003	1686	11	11	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0004	1686	10	0	0	10	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0005	1686	5	5	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0006	1686	2	0	2	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0007	1686	2	1	1	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0008	1686	2	0	2	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0009	1686	2	2	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0010	1686	1	0	1	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0011	1686	1	0	0	1	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0012	1686	1	0	0	0	0	1	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	a0013	1686	1	0	0	1	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCGF1_chr2_74500043_74512695	1/1	a0001	259	365	88	71	152	12	40	copy fasta	PCGF1	chr2	74500043	74512695
PCGF1_chr2_74500043_74512695	0/0	a0002	259	3	0	3	0	0	0	copy fasta	PCGF1	chr2	74500043	74512695
PCGF2_chr17_38728898_38753336	0/1	a0001	344	399	93	76	177	10	42	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	a0002	344	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	a0003	344	1	1	0	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF3_chr4_700832_775089	1/1	a0001	242	311	76	53	137	10	33	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	a0002	240	54	12	19	14	4	5	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	a0003	240	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF5_chr10_91215663_91289337	1/1	a0001	256	318	90	66	122	16	22	copy fasta	PCGF5	chr10	91215663	91289337
PCGF6_chr10_103297796_103356140	1/0	a0001	350	200	64	39	83	6	7	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/1	a0002	352	170	27	31	77	10	24	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	a0003	352	1	0	0	0	0	1	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	a0004	350	1	1	0	0	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCID2_chr13_113172536_113213669	1/1	a0001	399	414	88	80	180	18	46	copy fasta	PCID2	chr13	113172536	113213669
PCIF1_chr20_45929683_45953020	1/1	a0001	704	415	92	73	188	16	44	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	a0002	704	3	0	0	3	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	a0003	704	1	1	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	a0004	704	1	1	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	a0005	704	1	0	0	1	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	a0006	704	1	0	1	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCK1_chr20_57556110_57573121	0/1	a0001	622	330	83	40	168	14	24	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	1/0	a0002	622	84	1	14	55	2	11	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0003	622	19	2	9	0	0	8	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0004	622	13	3	6	0	1	3	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0005	622	6	0	3	0	1	2	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0006	622	4	0	0	4	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0007	622	4	3	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0008	622	2	0	0	2	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0009	622	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0010	622	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0011	622	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0012	622	1	0	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	a0013	622	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK2_chr14_24089311_24109125	1/1	a0001	640	360	78	64	165	16	35	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0002	640	26	9	0	10	0	7	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0003	640	6	0	0	6	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0004	640	2	0	2	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0005	640	2	2	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0006	640	2	2	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125