JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCK2_chr14_24089311_24109125	0/0	a0007	640	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0008	640	1	0	0	1	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0009	640	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0010	640	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0011	640	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	a0012	640	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCLAF_chr15_64359304_64386441	1/1	a0001	111	298	94	50	92	14	46	copy fasta	PCLAF	chr15	64359304	64386441
PCLO_chr7_82749012_83167884	0/0	a0001	5143	44	23	8	7	0	6	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0002	5143	13	0	2	10	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0003	5153	9	1	4	3	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0004	5143	9	2	2	2	1	2	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0005	5153	6	0	0	6	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/1	a0006	5143	6	3	2	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0007	5143	5	5	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0008	5143	5	0	1	4	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0009	5143	5	5	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0010	5153	4	0	3	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0011	5143	3	0	2	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0012	5143	3	3	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0013	5133	3	3	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0014	5143	2	0	2	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0015	5153	2	0	0	0	1	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0016	5143	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0017	5143	2	1	0	0	1	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0018	5143	2	1	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0019	5143	2	1	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0020	5143	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0021	5143	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0022	5143	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0023	5143	2	0	0	2	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0024	5143	2	0	0	0	1	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0025	5153	2	0	0	0	0	2	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0026	5142	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0027	5153	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0028	5153	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0029	5153	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0030	5153	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0031	5153	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0032	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0033	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0034	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0035	5143	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0036	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0037	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0038	5143	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0039	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0040	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0041	5143	1	0	0	0	1	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0042	5143	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0043	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884