JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCLO_chr7_82749012_83167884	0/0	a0044	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0045	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0046	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	1/0	a0047	5142	1	0	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0048	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0049	5143	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0050	5143	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0051	5143	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0052	5143	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0053	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0054	5143	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0055	5143	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0056	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0057	5143	1	0	0	0	1	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0058	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0059	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0060	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0061	5133	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0062	5143	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0063	5143	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0064	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0065	5143	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0066	5143	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0067	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0068	5143	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0069	5143	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0070	5143	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0071	5143	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0072	5153	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0073	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	a0074	5143	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCM1_chr8_17917988_18034948	1/1	a0001	2024	103	13	15	51	6	16	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0002	2024	84	27	23	19	6	9	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0003	2024	70	2	12	52	3	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0004	2024	36	12	9	12	2	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0005	2024	20	20	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0006	2024	8	0	0	8	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0007	2024	5	5	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0008	2024	5	0	0	5	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0009	2024	4	0	0	3	1	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0010	2024	4	0	0	0	0	4	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0011	2035	3	0	0	3	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0012	2024	3	0	0	3	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0013	2024	2	2	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0014	2024	2	1	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0015	2024	2	0	2	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0016	2024	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0017	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0018	2024	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0019	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948