JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCM1_chr8_17917988_18034948	0/0	a0020	2024	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0021	2024	1	0	0	0	0	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0022	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0023	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0024	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0025	2024	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0026	2024	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0027	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0028	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0029	2024	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0030	2024	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0031	1729	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	a0032	2024	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCMT1_chr6_149744741_149816419	0/1	a0001	227	239	84	36	89	7	22	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	1/0	a0002	227	95	8	24	39	9	14	copy fasta	PCMT1	chr6	149744741	149816419
PCMTD1_chr8_51812583_51904036	1/0	a0001	357	233	80	33	100	6	13	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/1	a0002	357	100	4	22	56	6	11	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	a0003	357	2	0	0	2	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	a0004	357	1	0	1	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD2_chr20_64250748_64281226	1/1	a0001	361	329	91	66	108	16	46	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	a0002	361	2	0	0	2	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	a0003	361	1	1	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCNA_chr20_5109953_5124958	1/1	a0001	261	390	94	70	172	16	36	copy fasta	PCNA	chr20	5109953	5124958
PCNP_chr3_101569180_101599465	1/1	a0001	178	416	85	74	199	14	42	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	a0002	178	6	6	0	0	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	a0003	178	1	0	0	1	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	a0004	178	1	1	0	0	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNT_chr21_46319156_46450769	0/0	a0001	3336	79	11	20	33	2	13	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0002	3336	53	2	9	34	0	8	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0003	3336	37	4	5	19	4	5	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0004	3336	18	16	2	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0005	3336	14	13	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/1	a0006	3349	12	1	5	2	1	2	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0007	3349	10	9	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0008	3336	7	1	1	0	1	4	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0009	3336	6	5	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0010	3336	6	0	5	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0011	3336	6	0	4	0	1	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0012	3336	5	0	0	4	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0013	3336	4	0	0	4	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0014	3336	4	0	3	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0015	3336	3	0	1	0	2	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0016	3336	3	3	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0017	3336	3	0	0	2	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0018	3336	3	0	3	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0019	3349	2	2	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0020	3336	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0021	3336	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0022	3336	2	2	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0023	3336	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769