JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCNT_chr21_46319156_46450769	0/0	a0024	3336	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0025	3336	2	2	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0026	3336	2	0	0	0	0	2	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0027	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0028	3349	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0029	3349	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0030	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0031	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0032	3336	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0033	3336	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0034	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0035	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0036	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0037	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0038	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0039	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0040	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0041	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0042	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0043	3336	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0044	3336	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0045	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0046	1743	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0047	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0048	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0049	3336	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0050	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0051	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0052	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0053	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0054	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0055	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0056	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0057	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0058	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0059	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0060	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0061	3336	1	0	0	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0062	3336	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0063	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	1/0	a0064	3336	1	0	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0065	3336	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0066	3349	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0067	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0068	3336	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	a0069	3323	1	0	0	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNX1_chr14_70902459_71120382	1/1	a0001	2341	327	72	56	150	10	37	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0002	2341	5	5	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0003	2341	3	0	0	3	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0004	2341	2	1	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382