JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCNX1_chr14_70902459_71120382	0/0	a0005	2341	2	2	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0006	2341	2	0	2	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0007	2341	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0008	2341	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0009	2341	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0010	2341	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0011	2341	1	0	0	0	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0012	2341	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0013	2341	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0014	2341	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0015	2341	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0016	2341	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	a0017	2341	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX2_chr1_232978435_233300725	1/0	a0001	2137	56	20	15	16	1	3	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0002	2137	27	7	6	7	0	7	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0003	2137	9	0	0	7	1	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0004	2137	8	3	3	1	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/1	a0005	2137	7	1	0	5	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0006	2137	6	5	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0007	2137	6	6	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0008	2137	5	3	1	1	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0009	2137	4	1	2	0	1	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0010	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0011	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0012	2137	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0013	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0014	2137	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0015	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0016	2137	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0017	2137	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0018	2137	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0019	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0020	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0021	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0022	2137	1	0	0	0	1	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0023	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0024	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0025	2137	1	0	0	1	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0026	2137	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	a0027	2137	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX3_chr11_65610776_65642439	0/0	a0001	2034	269	47	40	142	11	29	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/1	a0002	2034	77	30	18	22	4	2	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0003	2034	16	0	0	12	1	3	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0004	2030	6	6	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0005	2034	4	4	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0006	2034	3	0	3	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0007	2034	3	0	2	0	0	1	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0008	2034	3	3	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	1/0	a0009	2034	2	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0010	2034	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439