JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCOLCE_chr7_100597363_100613175	0/0	a0008	449	1	0	0	1	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	a0009	449	1	0	0	0	0	1	copy fasta	PCOLCE	chr7	100597363	100613175
PCP2_chr19_7626615_7638719	1/1	a0001	136	389	86	73	172	16	40	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	a0002	136	9	0	9	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	a0003	136	8	8	0	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	a0004	136	4	4	0	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	a0005	136	1	0	0	1	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	a0006	136	1	0	0	1	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP4L1_chr1_161253745_161290450	1/1	a0001	68	400	92	68	182	14	42	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	a0002	68	2	0	0	0	0	2	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4_chr21_39862438_39934392	1/1	a0001	62	428	96	66	204	14	46	copy fasta	PCP4	chr21	39862438	39934392
PCSK1N_chrX_48826096_48840610	1/1	a0001	260	303	76	59	127	13	26	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0002	260	2	0	2	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0003	51	1	0	1	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0004	119	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0005	260	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0006	228	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0007	180	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0008	195	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0009	145	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0010	98	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	a0011	51	1	1	0	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1_chr5_96385333_96438248	1/1	a0001	753	291	71	55	123	11	29	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	a0002	753	84	16	17	38	3	10	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	a0003	753	5	1	1	0	0	3	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	a0004	753	4	0	0	4	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	a0005	753	4	4	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	a0006	753	2	0	2	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	a0007	753	1	0	1	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	a0008	753	1	0	0	1	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK2_chr20_17222040_17489578	1/1	a0001	638	272	84	48	100	16	22	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	a0002	638	2	0	2	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK4_chr19_1476428_1495350	1/1	a0001	755	348	61	71	165	9	40	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0002	755	15	11	4	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0003	755	14	13	0	0	1	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0004	755	5	2	1	0	0	2	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0005	755	3	0	0	3	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0006	755	2	0	2	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0007	755	2	1	0	0	1	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0008	755	2	2	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0009	755	1	0	0	0	1	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0010	755	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0011	755	1	0	1	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0012	755	1	0	1	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0013	755	1	0	0	0	0	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0014	755	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0015	755	1	0	0	0	0	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0016	755	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	a0017	755	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK5_chr9_75885673_76367975	1/1	a0001	1887	29	4	7	12	1	3	copy fasta	PCSK5	chr9	75885673	76367975