JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCSK5_chr9_75885673_76367975	0/0	a0002	1887	15	4	6	0	2	3	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0003	1887	11	4	3	1	1	2	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0004	1887	9	4	4	1	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0005	1887	9	2	6	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0006	1887	7	4	1	1	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0007	1887	7	3	1	0	0	3	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0008	1887	7	1	4	1	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0009	1887	5	5	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0010	1887	5	1	3	0	1	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0011	1887	5	2	1	0	0	2	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0012	1887	3	0	3	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0013	1887	3	3	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0014	1887	3	0	2	0	1	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0015	1887	3	2	0	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0016	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0017	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0018	1887	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0019	1887	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0020	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0021	1887	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0022	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0023	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0024	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0025	1887	2	1	0	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0026	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0027	1887	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0028	1887	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0029	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0030	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0031	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0032	1887	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0033	1887	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0034	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0035	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0036	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0037	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0038	1887	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0039	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0040	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0041	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0042	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0043	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0044	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0045	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0046	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0047	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	a0048	1887	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK6_chr15_101298933_101494707	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	1/1	a0001	969	256	55	55	94	12	38	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0002	966	25	21	2	0	0	2	copy fasta	PCSK6	chr15	101298933	101494707