JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCSK6_chr15_101298933_101494707	0/0	a0003	975	12	0	3	9	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0004	969	9	6	3	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0005	115	7	0	2	4	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0006	966	6	6	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0007	115	4	0	0	1	0	3	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0008	969	2	0	0	2	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0009	969	2	1	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0010	978	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0011	969	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0012	969	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0013	969	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0014	969	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0015	969	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0016	969	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0017	969	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0018	121	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0019	966	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0020	126	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	a0021	121	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK7_chr11_117199337_117237073	1/1	a0001	785	406	93	80	179	15	37	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0002	785	21	0	3	4	3	11	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0003	785	19	0	1	18	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0004	785	3	0	0	3	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0005	785	2	0	0	0	0	2	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0006	785	2	0	0	2	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0007	785	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0008	785	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0009	785	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0010	785	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0011	785	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0012	785	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	a0013	785	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK9_chr1_55034548_55069852	0/1	a0001	692	263	36	48	132	12	34	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0002	693	32	0	6	21	1	4	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0003	692	28	20	2	4	0	2	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0004	692	25	8	6	5	4	2	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0005	693	8	7	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0006	693	7	0	2	3	1	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0007	692	5	5	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0008	693	5	5	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0009	692	4	0	0	4	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	1/0	a0010	692	3	1	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0011	692	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0012	693	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0013	693	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0014	692	2	0	0	2	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0015	692	2	0	2	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0016	693	2	1	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0017	693	2	0	1	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0018	141	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852