JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARL4C_chr2_234488041_234502081	1/1	a0001	201	468	100	84	220	18	44	copy fasta	ARL4C	chr2	234488041	234502081
ARL4D_chr17_43393993_43406137	1/1	a0001	201	428	96	76	192	14	48	copy fasta	ARL4D	chr17	43393993	43406137
ARL5A_chr2_151793797_151833421	1/1	a0001	179	380	88	46	190	14	40	copy fasta	ARL5A	chr2	151793797	151833421
ARL5B_chr10_18654431_18686639	1/1	a0001	179	444	96	84	204	14	44	copy fasta	ARL5B	chr10	18654431	18686639
ARL5C_chr17_39151894_39171161	1/1	a0001	179	273	29	65	130	13	34	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0002	179	55	1	3	44	4	3	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0003	179	28	27	1	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0004	179	27	21	5	0	1	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0005	179	10	9	1	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0006	179	7	6	1	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0007	179	2	0	0	0	0	2	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0008	179	2	0	0	2	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0009	179	1	1	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0010	129	1	0	0	1	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0011	179	1	1	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0012	179	1	1	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0013	179	1	0	0	1	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	a0014	179	1	0	0	0	0	1	copy fasta	ARL5C	chr17	39151894	39171161
ARL6IP1_chr16_18786669_18806549	1/1	a0001	203	343	96	57	138	14	36	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	a0002	203	1	0	1	0	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP4_chr12_122975681_122987909	1/1	a0001	237	327	65	58	153	9	40	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	a0002	237	24	22	2	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	a0003	237	2	2	0	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	a0004	237	1	0	0	0	1	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	a0005	165	1	0	0	1	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	a0006	237	1	1	0	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP5_chr3_69079937_69111092	1/1	a0001	188	434	94	64	212	18	44	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP6_chr2_152713620_152767396	1/1	a0001	226	386	92	70	158	16	48	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	a0002	226	2	0	2	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	a0003	226	2	2	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6_chr3_97759758_97806229	1/1	a0001	186	362	92	72	140	16	40	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	a0002	186	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	a0003	186	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL8A_chr1_202128404_202149737	1/1	a0001	186	436	98	84	192	18	42	copy fasta	ARL8A	chr1	202128404	202149737
ARL8B_chr3_5117292_5185911	1/1	a0001	186	303	78	56	124	6	37	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	a0002	186	1	0	0	0	0	1	copy fasta	ARL8B	chr3	5117292	5185911
ARL9_chr4_56500791_56529453	0/1	a0001	265	171	54	25	59	9	23	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0002	265	101	11	26	54	5	5	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0003	83	61	4	1	48	0	8	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0004	266	49	5	6	33	3	2	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0005	265	10	9	1	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0006	70	9	0	6	2	1	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0007	265	4	1	2	0	0	1	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0008	266	2	2	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0009	265	2	2	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0010	265	2	0	0	2	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	1/0	a0011	265	1	0	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0012	265	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0013	265	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	a0014	265	1	0	0	0	0	1	copy fasta	ARL9	chr4	56500791	56529453