JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCSK9_chr1_55034548_55069852	0/0	a0019	692	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0020	692	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0021	678	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0022	692	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0023	692	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0024	692	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0025	692	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0026	692	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0027	693	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	a0028	693	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCTP_chr17_55746051_55782374	0/0	a0001	214	251	68	43	112	6	22	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	a0002	214	34	24	3	3	2	2	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	a0003	181	2	0	0	2	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	a0004	214	1	0	0	1	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCYOX1L_chr5_149353046_149374653	1/1	a0001	494	236	45	44	114	8	23	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0002	494	92	19	9	44	6	14	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0003	494	21	4	10	0	2	5	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0004	494	8	7	1	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0005	494	6	5	1	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0006	494	3	3	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0007	494	3	0	3	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0008	494	2	2	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	a0009	494	1	1	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1_chr2_70253137_70286185	1/1	a0001	505	394	82	66	193	7	44	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0002	505	13	2	8	0	1	2	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0003	505	5	5	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0004	505	4	0	0	4	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0005	505	2	2	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0006	505	1	0	0	0	0	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0007	505	1	0	0	0	0	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0008	505	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0009	505	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0010	505	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	a0011	505	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYT1A_chr3_196229368_196292726	1/1	a0001	367	301	95	60	88	16	40	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	a0002	367	5	0	0	5	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	a0003	367	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	a0004	367	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	a0005	367	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	a0006	367	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1B_chrX_24553087_24652347	1/1	a0001	369	258	66	44	107	13	26	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	a0002	365	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	a0003	48	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT2_chr17_81895958_81916399	1/1	a0001	389	298	87	58	103	8	40	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	a0002	389	1	0	0	1	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	a0003	389	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PC_chr11_66843420_66963383	1/1	a0001	1178	267	72	41	127	8	17	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	a0002	1178	2	0	0	2	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	a0003	1178	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	a0004	1178	1	0	0	1	0	0	copy fasta	PC	chr11	66843420	66963383