JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PC_chr11_66843420_66963383	0/0	a0005	1178	1	0	1	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	a0006	1178	1	0	0	0	0	1	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	a0007	1178	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PDAP1_chr7_99389673_99413597	1/1	a0001	181	333	86	38	151	14	42	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	a0002	181	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDCD10_chr3_167678298_167739892	1/1	a0001	212	284	80	34	140	8	20	copy fasta	PDCD10	chr3	167678298	167739892
PDCD11_chr10_103391626_103451294	1/0	a0001	1871	143	23	25	80	6	8	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/1	a0002	1871	102	9	22	48	5	17	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0003	1871	57	29	2	21	2	3	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0004	1871	21	17	3	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0005	1871	8	0	2	0	0	6	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0006	1871	8	2	4	0	1	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0007	1871	4	4	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0008	1871	3	0	0	3	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0009	1871	2	0	2	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0010	1871	2	0	2	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0011	1871	2	1	1	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0012	1871	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0013	1871	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0014	1871	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0015	1871	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0016	1871	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0017	1871	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0018	1871	1	0	0	0	0	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0019	1871	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0020	1871	1	0	1	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	a0021	1871	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD1LG2_chr9_5505531_5576282	0/1	a0001	273	286	28	56	160	10	31	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0002	273	108	57	10	30	0	11	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0003	273	5	5	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0004	273	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0005	273	1	0	0	0	0	1	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0006	273	1	0	0	1	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	1/0	a0007	273	1	0	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0008	273	1	0	0	1	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0009	273	1	0	0	0	0	1	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	a0010	273	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1_chr2_241844884_241863894	0/1	a0001	288	313	94	54	105	16	43	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	a0002	288	91	0	17	71	0	3	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	a0003	288	1	0	1	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	a0004	288	1	0	0	1	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	a0005	44	1	0	0	1	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD2L_chr19_34399399_34431168	1/1	a0001	358	378	89	72	158	15	42	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	a0002	358	2	0	2	0	0	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	a0003	358	1	1	0	0	0	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	a0004	142	1	0	0	0	1	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2_chr6_170570295_170589637	1/1	a0001	344	351	79	68	145	14	43	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	a0002	344	13	13	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	a0003	344	3	0	0	2	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	a0004	24	1	0	0	1	0	0	copy fasta	PDCD2	chr6	170570295	170589637