JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDCD2_chr6_170570295_170589637	0/0	a0005	344	1	0	0	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	a0006	344	1	0	0	1	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	a0007	344	1	0	0	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	a0008	344	1	0	0	1	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD4_chr10_110866928_110905006	0/0	a0001	469	398	78	64	205	11	40	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	a0002	469	16	11	2	0	1	2	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	a0003	469	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	a0004	469	1	0	0	0	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	a0005	469	1	0	0	0	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	a0006	469	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD5_chr19_32576190_32592453	1/1	a0001	125	420	92	68	202	16	40	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	a0002	125	2	2	0	0	0	0	copy fasta	PDCD5	chr19	32576190	32592453
PDCD6IP_chr3_33793630_33874703	1/1	a0001	868	110	49	19	34	2	4	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0002	868	102	15	17	57	2	11	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0003	868	76	1	11	45	3	16	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0004	868	21	11	7	0	1	2	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0005	868	3	0	0	2	0	1	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0006	868	2	0	0	2	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0007	868	1	0	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0008	868	1	0	0	1	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0009	868	1	0	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	a0010	868	1	0	0	1	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6_chr5_266646_319974	1/1	a0001	191	316	62	66	138	13	35	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	a0002	187	37	10	15	8	1	3	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	a0003	187	7	6	1	0	0	0	copy fasta	PDCD6	chr5	266646	319974
PDCD7_chr15_65112379_65138808	1/1	a0001	485	199	79	38	51	7	22	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0002	486	7	0	7	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0003	485	5	5	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0004	485	2	2	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0005	485	1	0	1	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0006	485	1	1	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0007	485	1	1	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0008	485	1	0	0	1	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	a0009	485	1	0	0	0	1	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCL2_chr4_55551519_55597245	1/1	a0001	241	372	94	62	164	14	36	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	a0002	241	2	0	0	2	0	0	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	a0003	241	1	1	0	0	0	0	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	a0004	241	1	1	0	0	0	0	copy fasta	PDCL2	chr4	55551519	55597245
PDCL3_chr2_100557993_100581739	1/1	a0001	239	391	93	70	160	18	48	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	a0002	239	2	0	0	2	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	a0003	239	1	0	0	1	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	a0004	239	1	0	0	1	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	a0005	239	1	1	0	0	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL_chr9_122813097_122833588	1/1	a0001	301	422	98	70	194	12	46	copy fasta	PDCL	chr9	122813097	122833588
PDC_chr1_186438566_186466114	1/1	a0001	246	401	92	72	187	14	34	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	a0002	246	2	0	0	2	0	0	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	a0003	246	1	0	0	1	0	0	copy fasta	PDC	chr1	186438566	186466114
PDE10A_chr6_165322289_165668241	1/1	a0001	1055	208	77	52	45	5	27	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	a0002	1055	7	6	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	a0003	1055	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241