JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDE10A_chr6_165322289_165668241	0/0	a0004	1055	1	0	0	1	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	a0005	1055	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	a0006	1055	1	0	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	a0007	1055	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	a0008	1055	1	0	0	0	1	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE11A_chr2_177618244_178077777	0/0	a0001	933	88	55	11	12	1	9	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/1	a0002	934	60	12	14	21	3	9	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	1/0	a0003	933	5	4	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0004	933	4	0	0	4	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0005	933	4	3	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0006	934	2	0	2	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0007	328	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0008	544	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0009	934	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0010	934	1	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0011	934	1	0	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0012	934	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	a0013	934	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE12_chr3_57551274_57571848	1/1	a0001	609	241	83	40	89	6	21	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	a0002	609	138	12	34	72	8	12	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	a0003	609	3	0	0	1	0	2	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	a0004	609	2	0	0	0	0	2	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	a0005	609	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	a0006	609	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	a0007	609	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	a0008	609	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE1A_chr2_182135041_182432036	1/1	a0001	529	259	72	41	102	14	28	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	a0002	529	2	0	2	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	a0003	529	1	0	1	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	a0004	529	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	a0005	529	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1B_chr12_54544601_54584239	1/1	a0001	536	428	100	77	190	15	44	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	a0002	536	1	0	1	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	a0003	536	1	0	0	0	1	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1C_chr7_31746179_32075407	1/1	a0001	709	255	95	46	77	5	30	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	a0002	709	3	0	0	3	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	a0003	709	1	0	0	0	1	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	a0004	709	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	a0005	709	1	0	1	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	a0006	709	1	0	1	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE2A_chr11_72571141_72679422	1/1	a0001	941	262	88	51	86	10	25	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	a0002	941	24	0	7	12	0	5	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	a0003	941	2	0	2	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	a0004	941	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	a0005	941	1	0	0	1	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	a0006	941	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	a0007	941	1	0	0	1	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE3A_chr12_20363537_20693583	1/1	a0001	1141	138	41	35	30	9	21	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	a0002	1141	53	23	13	11	3	3	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	a0003	1141	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583