JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDE3A_chr12_20363537_20693583	0/0	a0004	1141	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	a0005	1141	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	a0006	1141	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	a0007	1141	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	a0008	1141	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	a0009	1141	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3B_chr11_14638804_14877044	1/1	a0001	1112	324	82	49	153	8	30	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0002	1112	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0003	1112	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0004	108	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0005	1112	1	0	1	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0006	1112	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0007	1112	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0008	1112	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	a0009	1112	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE4A_chr19_10415538_10474630	1/0	a0001	886	240	58	40	106	10	25	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/1	a0002	886	67	26	13	17	2	8	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	a0003	886	9	0	0	9	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	a0004	886	2	2	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	a0005	886	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	a0006	886	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	a0007	886	1	0	0	0	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	a0008	886	1	0	1	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4B_chr1_65787895_66379574	0/0	a0001	736	116	43	35	22	2	14	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	a0002	736	2	1	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4C_chr19_18202965_18231438	1/1	a0001	680	286	56	46	140	6	36	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0002	680	84	14	25	31	6	8	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0003	680	8	7	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0004	680	6	5	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0005	680	3	3	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0006	680	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0007	680	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0008	680	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0009	680	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0010	680	1	0	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0011	680	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	a0012	680	1	0	0	1	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4DIP_chr1_148839428_149038016	1/0	a0001	2412	8	1	4	1	0	1	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0002	2412	4	0	3	0	0	1	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0003	2412	3	0	2	1	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0004	2412	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0005	2412	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/1	a0006	2412	1	0	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0007	2412	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0008	2412	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0009	2412	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0010	2412	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0011	2412	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	a0012	2412	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4D_chr5_58964038_59898726	0/0	a0001	809	73	41	12	6	6	8	copy fasta	PDE4D	chr5	58964038	59898726