JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDE6C_chr10_93607537_93671010	0/0	a0008	858	2	1	1	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0009	858	1	0	1	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0010	858	1	0	0	0	0	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0011	858	1	0	0	0	1	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0012	858	1	0	0	1	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0013	858	1	1	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6D_chr2_231727433_231786282	1/1	a0001	150	263	91	62	60	18	30	copy fasta	PDE6D	chr2	231727433	231786282
PDE6D_chr2_231727433_231786282	0/0	a0002	150	2	2	0	0	0	0	copy fasta	PDE6D	chr2	231727433	231786282
PDE6D_chr2_231727433_231786282	0/0	a0003	150	1	1	0	0	0	0	copy fasta	PDE6D	chr2	231727433	231786282
PDE6G_chr17_81645459_81661542	1/1	a0001	87	432	89	80	193	18	50	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	a0002	31	1	1	0	0	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	a0003	28	1	0	0	1	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6H_chr12_14968042_14986865	1/1	a0001	83	445	93	72	228	12	38	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	a0002	83	2	0	0	0	0	2	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	a0003	83	1	1	0	0	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE7A_chr8_65709334_65847064	1/1	a0001	482	235	73	51	72	13	24	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	a0002	482	12	11	1	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	a0003	482	1	0	0	0	1	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7B_chr6_135846701_136200574	1/1	a0001	450	136	54	30	36	2	12	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	a0002	450	3	3	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	a0003	450	3	3	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE8A_chr15_84976856_85144142	1/1	a0001	829	326	86	53	139	15	31	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0002	829	4	0	0	4	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0003	829	3	2	1	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0004	829	3	0	1	0	1	1	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0005	829	2	0	2	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0006	829	2	0	0	0	0	2	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0007	829	2	0	1	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0008	829	1	0	0	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	a0009	829	1	0	0	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8B_chr5_77205680_77433256	1/1	a0001	885	308	74	52	133	16	31	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	a0002	885	3	3	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	a0003	885	2	0	0	1	0	1	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	a0004	885	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE9A_chr21_42648621_42780509	1/1	a0001	593	317	86	58	119	14	38	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	a0002	593	2	0	0	0	0	2	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	a0003	593	2	2	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	a0004	593	1	1	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	a0005	593	1	0	0	1	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	a0006	593	1	1	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDF_chr16_69321913_69335588	1/0	a0001	243	258	52	63	105	12	25	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/1	a0002	243	102	46	13	19	6	17	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	a0003	243	2	0	0	0	0	2	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	a0004	243	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	a0005	68	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDGFA_chr7_492258_524846	1/1	a0001	196	298	73	62	117	16	28	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	a0002	196	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	a0003	196	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	a0004	196	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	a0005	196	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846