JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDGFB_chr22_39218359_39249982	1/1	a0001	241	380	98	74	142	16	48	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	a0002	241	2	2	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	a0003	241	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	a0004	241	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	a0005	241	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	a0006	241	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFC_chr4_156755454_156976799	1/1	a0001	345	207	66	28	83	4	24	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	a0002	345	1	0	0	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFD_chr11_103902189_104169147	1/1	a0001	370	195	66	28	78	4	17	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	a0002	370	4	0	3	0	0	1	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	a0003	370	1	0	1	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFRA_chr4_54224293_54303245	1/1	a0001	1089	204	51	47	73	9	22	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0002	1089	83	29	9	32	5	8	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0003	1089	5	5	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0004	1089	2	0	2	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0005	1089	2	0	2	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0006	1089	1	0	0	1	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0007	1089	1	0	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0008	1089	1	0	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	a0009	1089	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRB_chr5_150108839_150160845	1/1	a0001	1106	366	66	58	186	16	38	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0002	1106	25	8	5	10	0	2	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0003	1106	6	6	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0004	1106	5	0	0	5	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0005	1106	4	3	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0006	1106	3	2	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0007	1106	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0008	1106	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0009	1106	1	0	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0010	1106	1	0	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0011	1106	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0012	1106	1	0	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0013	1106	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0014	1106	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	a0015	1106	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRL_chr8_17572216_17648144	1/1	a0001	375	382	89	74	163	8	46	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	a0002	375	10	9	1	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	a0003	375	2	0	2	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	a0004	375	2	2	0	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	a0005	102	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	a0006	375	1	0	1	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	a0007	375	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	a0008	375	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDHA1_chrX_19338927_19366718	1/1	a0001	390	223	76	41	71	5	28	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	a0002	390	23	0	0	23	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	a0003	390	1	0	0	1	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA2_chr4_95835093_95846464	1/1	a0001	388	399	83	77	177	16	44	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	a0002	388	9	0	0	8	0	1	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	a0003	388	7	6	1	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	a0004	388	2	2	0	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464