JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDHA2_chr4_95835093_95846464	0/0	a0005	388	2	0	0	2	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	a0006	388	2	1	1	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	a0007	388	1	0	1	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	a0008	388	1	0	0	0	0	1	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	a0009	388	1	0	0	1	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHB_chr3_58422630_58438832	1/1	a0001	359	360	98	78	126	12	44	copy fasta	PDHB	chr3	58422630	58438832
PDHX_chr11_34911618_35001128	1/0	a0001	501	209	41	47	93	4	23	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0002	501	76	42	7	19	1	7	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0003	501	12	1	4	0	2	5	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0004	501	4	0	1	0	3	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0005	501	3	3	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0006	501	3	3	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0007	501	2	0	0	2	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/1	a0008	501	2	0	1	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0009	501	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0010	501	1	0	0	0	0	1	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	a0011	501	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDIA2_chr16_278164_292215	1/0	a0001	525	268	37	44	145	7	34	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0002	525	38	1	7	17	5	8	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0003	525	29	16	2	11	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0004	525	19	13	5	0	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/1	a0005	525	15	1	7	0	3	3	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0006	525	12	9	2	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0007	525	9	0	2	4	1	2	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0008	525	9	1	6	0	1	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0009	525	8	8	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0010	525	4	0	3	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0011	525	3	1	2	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0012	525	2	0	2	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0013	525	2	2	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0014	525	2	2	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0015	525	2	2	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0016	525	1	0	0	0	1	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0017	525	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0018	194	1	0	1	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0019	525	1	0	0	0	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0020	525	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0021	525	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0022	525	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0023	525	1	0	1	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0024	525	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0025	525	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0026	525	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0027	525	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0028	525	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	a0029	525	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA3_chr15_43741438_43778278	1/1	a0001	505	353	91	45	169	12	34	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	a0002	505	2	0	0	0	0	2	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	a0003	505	1	0	1	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	a0004	505	1	1	0	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278